PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast08G201900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB
Protein Properties Length: 252aa    MW: 27340.7 Da    PI: 8.8418
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast08G201900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-1683129248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         g WT+eEd +l+ av+++G + W+ Iar    gR +kqc++rw ++l
  Brast08G201900.1.p  83 GTWTKEEDNILKAAVNEFGERKWAMIARSYLPGRIGKQCRERWINHL 129
                         79*************************98877************996 PP

2Myb_DNA-binding391.9e-12137177345
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          WT+ Ed+  vda+++  +  W+ Ia+ ++ gR+++++k++w+
  Brast08G201900.1.p 137 VWTEAEDLEPVDAHRMCRNQ-WSVIAKQLP-GRSENSVKNHWN 177
                         7*****************99.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.4377133IPR017930Myb domain
SMARTSM007178.3E-1481131IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-2681176IPR009057Homeodomain-like
PfamPF002496.6E-1483129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2183134IPR009057Homeodomain-like
CDDcd001671.63E-1484129No hitNo description
PROSITE profilePS5129412.22134184IPR017930Myb domain
SMARTSM007175.3E-8134182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-14135179IPR009057Homeodomain-like
PfamPF002497.3E-11137177IPR001005SANT/Myb domain
CDDcd001671.06E-8138177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAVGHAFFMD REQEAAMDKV AMGKYLSLGI SGLGGGAAGP NNSAAPATYR FGGGALPVDA  60
MTAPAPPPPG APGAVEDVEQ FNGTWTKEED NILKAAVNEF GERKWAMIAR SYLPGRIGKQ  120
CRERWINHLH TNIKNDVWTE AEDLEPVDAH RMCRNQWSVI AKQLPGRSEN SVKNHWNATR  180
RGLRARRLLK KRSSKHQPCP GRLSHLAHYI STLXPPPPSA TAASLSPPLL PVQEHEDQLQ  240
AQDGDGIISS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-30831798103B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972257.14e-52PREDICTED: uncharacterized protein LOC101784221
SwissprotQ9S7L26e-35MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A0Q3J3W13e-87A0A0Q3J3W1_BRADI; Uncharacterized protein
STRINGSi004755m1e-51(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188233101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.15e-33myb domain protein 98